Package: countsplit 4.0.2

Anna Neufeld

countsplit: Splitting a Count Matrix into Independent Folds

Implements the count splitting methodology from Neufeld et al. (2022) <doi:10.1093/biostatistics/kxac047> and Neufeld et al. (2023) <arxiv:2307.12985>. Intended for turning a matrix of single-cell RNA sequencing counts, or similar count datasets, into independent folds that can be used for training/testing or cross validation. Assumes that the entries in the matrix are from a Poisson or a negative binomial distribution.

Authors:Anna Neufeld [aut, cre, cph], Mischko Heming [ctb], Joshua Popp [ctb], Sebastian Quadrini [ctb]

countsplit_4.0.2.tar.gz
countsplit_4.0.2.zip(r-4.7-x86_64)countsplit_4.0.2.zip(r-4.7-arm64)countsplit_4.0.2.zip(r-4.6-x86_64)countsplit_4.0.2.zip(r-4.6-arm64)countsplit_4.0.2.zip(r-4.5-x86_64)
countsplit_4.0.2.tgz(r-4.6-x86_64)countsplit_4.0.2.tgz(r-4.6-arm64)countsplit_4.0.2.tgz(r-4.5-x86_64)countsplit_4.0.2.tgz(r-4.5-arm64)
countsplit_4.0.2.tar.gz(r-4.7-arm64)countsplit_4.0.2.tar.gz(r-4.7-x86_64)countsplit_4.0.2.tar.gz(r-4.6-arm64)countsplit_4.0.2.tar.gz(r-4.6-x86_64)
countsplit_4.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
countsplit/json (API)

# Install 'countsplit' in R:
install.packages('countsplit', repos = c('https://anna-neufeld.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/anna-neufeld/countsplit/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

5.68 score 23 stars 1 packages 23 scripts 364 downloads 2 exports 3 dependencies

Last updated from:a9e9ad2144. Checks:13 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64ERROR94
linux-devel-x86_64ERROR124
source / vignettesOK179
linux-release-arm64ERROR91
linux-release-x86_64ERROR121
macos-release-arm64ERROR112
macos-release-x86_64ERROR222
macos-oldrel-arm64ERROR108
macos-oldrel-x86_64ERROR208
windows-devel-arm64ERROR298
windows-devel-x86_64ERROR135
windows-release-arm64ERROR298
windows-release-x86_64ERROR102
windows-oldrel-x86_64ERROR98
wasm-releaseOK86

Exports:countsplitest_overdispersions

Dependencies:latticeMatrixRcpp